PAPERS

Jin X, Jo K
Single-molecule DNA visualization
Handbook of Chemical Biology of Nucleic Acids, 2022, in press

Jin X, Kim YT, Jo K
DNA visualization using fluorescent proteins
Methods in Molecular Biology, 2022, in press , IF=1.17
invited contribution to a Book of Fluorescent Proteins: A Laboratory Manual

Jin X, Hapsari ND, Lee SH, Jo K
DNA binding fluorescent proteins as single-molecule probes
Analyst , 2020, 145, 4079-4095, DOI: 10.1039/D0AN00218F, 6/21, IF=4.616 invited review

Kang Y, Cheon N, Cha J, Kim A, Kim H, Lee L, Kim K, Jo K, Lee J
High-throughput single-molecule imaging system using nano-fabricated trenches and fluorescent DNA-binding proteins
Biotechnology and Bioengineering , 2020, 117(6), 1640-1648, doi.org/10.1002/bit.27331, 6/6, IF=4.530

Kim K, Yoon S, Chang J, Lee S, Cho H, Jeong S, Jo K, Lee J
Multifunctional Heterogeneous Carbon Nanotube Nanocomposites Assembled by DNA Binding Peptide Anchors
Small, 2020, e1905821, doi.org/10.1002/smll.201905821, 1/3, IF=13.281

Shin E, Kim W, Lee S, Bae J, Kim S, Ko W, Seo HS, Lim S, Lee HS, Jo K
Truncated TALE-FP as DNA Staining Dye in a High-salt Buffer
Scientific Reports, 2019, 9, 17197, 10.1038/s41598-019-53722-0, 11/20 IF=4.379

Jang Y, Jin X, Shankar P, Lee J, Jo K, Lim K
Molecular-Level Interactions between Engineered Materials and Cells
International Journal of Molecular Sciences, 2019, 20(17), 4142, DIOI: 10.3390/ijms20174142, 8/25, IF=5.923

Lee S, Lee Y, Kim Y, Wang C, Park J, Jung GY, Chen Y, Chang R, Ikeda S, Sugiyama H, Jo K
Nanochannel-Confined TAMRA-Polypyrrole Stained DNA Stretching by Varying the Ionic Strength from Micromolar to Millimolar Concentrations
Polymers, 2019, 11(1), 15, DOI: 10.3390/polym11010015, 12/20, IF=4.329

Park J, Lee S, Won N, Shin E, Kim S, Chun M, Gu J, Jung G, Lim K, Jo K
Single-molecule DNA visualization using AT-specific red and non-specific green DNA-binding fluorescent proteins
Analyst, 2019, 144 (3), 921-927, DOI: 10.1039/C8AN01426D, 02/07, IF=4.616
Invited contribution to a themed collection: Next wave advances in single cell analyses

Lee S, Kawamoto Y, Thangavel V, Park J, Bae J, Kim-Ha J, Sugiyama H, Jo K
TAMRA-Polypyrrole for A/T Sequence Visualization on DNA Molecules
Nucleic Acids Research , 2018, 46 (18), e108, 10/12, IF=16.971 (10/292)

Gubu, Li, Yan, Zheng, Lee S, Feng, Li, Lei, Jo K, Tang
Bioorthogonal metabolic cellular DNA labelling using vinyl thioether modified thymidine and o-quinolinone quinone methide
Chemistry A European Journal, 2018, 24(22), 5895-5900, 4/17, IF=5.236

Kounovsky-Shafer, Hernandez-Ortiz, Potamousisc, Tsvid, Place, Ravindran, Jo K, Zhou, Odijk, de Pablo, Schwartz
Electrostatic confinement and manipulation of DNA molecules for genome analysis
PNAS, 2017, 114(51), 13400-13405, 12/4, IF=11.205

Kim K, Lee S, Jin X, Kim S, Jo K, Lee J
DNA binding peptide directed synthesis of continuous DNA nanowires for analysis of large DNA molecules by scanning electron microscope
Small, 2017, 13, 1601926 , 1/11, IF=13.281 Featured as Cover Image

Ko W, Kim S, Lee S, Jo K, Lee H
Genetically encoded FRET sensors containing a fluorescent unnatural amino acid as a FRET donor
RSC Advances, 2016, 6, 78661-78668, 8/10, IF=3.361

Kang Y, Lee J, Kim J, Oh Y, Kim D, Lee J, Lim S, Jo K
Analysis of Alcohol-induced DNA Damage in Escherichia coli by Visualizing Single Genomic DNA Molecules
Analyst, 2016, 141, 4326-4331, 7/21 IF=4.616

Lee S, Jo K
Visualization of surface-tethered large DNA molecules with a fluorescent protein DNA binding peptide
Journal of Visualized Experiments, 2016, e54141, 6/23 IF=1.355

Lee S, Wang C, Song J, Kim D, Oh Y, Ko W, Lee J, Park J, Lee H, Jo K
Investigation of Various Fluorescent Protein-DNA Binding Peptides for Effectively Visualizing Large DNA Molecules
RSC Advances, 2016, 6, 46291-46298, 5/5, IF=3.361

Jung J, Jang E, Shoaib M, Jo K, Kim J
Droplet formation and growth inside a polymer network: A molecular dynamics simulation study
J Chem Phys, 2016, 144, 134502,4/7, IF=3.488

Lee J, Kim Y, Lim S, Jo K
Single-Molecule Visualization of ROS-induced DNA Damage in Large DNA Molecules
Analyst, 2016, 141, 847-852,2/7 , IF=4.616

Ko S, Kim S, Jo K, Lee H
Genetic incorporation of recycled unnatural amino acids
Amino acids, 2016,48(2), 847-852, 2/1, IF=3.520

Lee S, Oh Y; Lee J, Choe S, Lim S, Lee H, Jo K, Schwartz DC
DNA Binding Fluorescent Proteins for the Direct Visualization of Large DNA Molecules
Nucleic Acids Research, 2016,44(1),e6,1/8, IF=16.971

Lee S, Cheo S, Oh Y, Jo K
Maldi-tof analysis of binding between DNA and peptides containing lysine and tryptophan
Mass spectrometry letters, 2015, 6(3) 80-84, IF=0.19

Lee J, Kim Y, Lee S, Jo K
Visualization of Large Elongated DNA Molecules
Electrophoresis, 2015,36(17), 2057-2071, 9/3, DOI:10.1002/elps.201400479, IF=3.535 Invited Review

Lee C, Park S, Lee J, Park S, Jo K, Oh H
"Mass Spectrometric Determination of Zn2+ Binding/Dissociation Constant for Zinc Finger Peptides",
Mass Spectrometry Letters, 2015,6(1), 7-12, 3/25, IF=0.19

Park H, Kang H, Ko W,Lee W, Jo K,Lee H
FRET-based analysis of protein-nucleic acid interactions by genetically incorporating a fluorescent amino acid
Amino Acids, 2015,47(4),729-734, 2015/4/1, IF=3.520

Lee J, Kim S, Jeong H, Jung GY, Chang R, Chen YL, Jo K
Nanoslit Confined DNA at Low Ionic Strengths
ACS Macro Letters, 2014,3(9),926-930, 9/16 IF=6.903

Jeong H, Song H, Pak Y, Kwon IK, Jo K, Lee H, Jung GY
Enhanced Light Absorption of Silicon Nanotube Arrays for Organic/Inorganic Hybrid Solar Cells
Advanced Materials, 2014, 26(21), 3445-3450, 6/4 IF=30.849, Featured as Cover Image

Yeom T, Lee J, Lee S, Kang S, Kim KR, Han B, Lee HS, Jo K
Mass Spectrometric Investigation of the Role of the Linking Polypeptide Chain in DNA Polymerase I
Analyst, 2014, 139(10), 2432-2439, 5/21, IF=4.616 Hot Article

Song H, Jo K, Jung BY, Jung GY
Fabrication of periodically aligned vertical single-crystalline anatase TiO2 nanotubes with perfect hexagonal open-ends by using chemical capping materials
Nano Research, 2014, 7(1): 104-109, 1/1, IF=8.897

Kounovsky-Shafer KL, Hernández-Ortiz JP, Jo K, Odijk T, de Pablo JJ, Schwartz DC
"Presentation of large DNA molecules for analysis as nanoconfined dumbbells"
Macromolecules , 2013, 46 (20), 8356-8368, 10/7, IF=5.985, Featured in Nature Biotechnology

Smith D, Han M, Park J, Kim K, Yeom T, Lee J, Kim D, Bingman C, Kim H, Jo K, Han BW, Phillips GN
Crystal structure of the protein from Arabidopsis thaliana gene At5g06450, a putative DnaQ-like exonuclease domain-containing protein with homohexameric assembly,
PROTEINS-Structure, Function, and Bioinformatics, 2013, 81(9), 1669-1675, 6/17, IF=3.756

Lee J, Park HS, Lim S, Jo K,
Visualization of UV-Induced Damages on Single DNA Molecules,
Chemical Communications, 2013,49(42),4740-4742, 5/25 IF=6.222 Featured as Cover Image

Park S, Park S, Oh J, Han S, Jo K, Oh H
Examination of Various Metal Ion Sources for Reducing Nonspecific Zinc finger−Zn2+ Complex Formation in ESI Mass Spectrometry,
Mass Spectrometry Letters, 2012,3(3), 82-85, 9/20, IF=0.19

Chang R and Jo K
DNA Conformation in Nanochannels: Monte Carlo Simulation Studies Using a Primitive DNA Model
Journal of Chemical Physics, 2012, 136(9), 095101,3/7, IF=3.488 Highlight

Park S, Jo K, Oh H
"Zinc-finger Motif Noncovalent Interactions with Double-Stranded DNA Characterized by Negative-ion Electrospray Mass Spectrometry",
Analyst, 2011,136(18), 3739-3746, 9/21, IF=4.616 Featured as Cover Image

Kim Y, Jo K,
Neutravidin Coated Surfaces for Single DNA Molecule Analysis,
Chemical Communications, 2011, 47(22), 6248-6250, 6/14, IF=6.222 Featured as Cover Image

Kim Y, Kim K, Kounovsky KL, Chang R, Jung GY, de Pablo JJ, Jo K, Schwartz DC
Nanochannel Confinement: DNA Stretch Approaching Full Contour Length,
Lab on a Chip, 2011, 11(10), 1721-1729, 5/21, IF=6.799 Featured as Cover Image

Lee J, Yun Y, Kim J, Kim Y, Jo K,
Roof-Collapsed PDMS Mask for Nanochannel Fabrication,
Bulletin of Korean Chemical Society, 2011,32(1),33-34, 1/20, IF=0.950

Lee J, Yun Y, Kim Y, Jo K,
PDMS Nanoslits without Roof Collapse,
Bulletin of Korean Chemical Society, 2009, 30(8), 1793-1797, 8/20, IF=0.950

Jo K, Chen YL, de Pablo JJ, Schwartz DC,
Elongation and Migration of Single DNA Molecules in Microchannels Using Oscillatory Shear Flows,
Lab on a Chip, 2009, 9(16), 2348 - 2355, 8/21, DOI:10.1039/B902292A, IF=6.799 Highlight

Yu, H, Jo K, Kounovsky K, de Pablo JJ ,Schwartz DC,
"Molecular Propulsion: Chemical Sensing and Chemotaxis of DNA Driven by RNA Polymerase",
Journal of the American Chemical Society, 2009, 131 (16), pp 5722-5723, IF=15.419

Jo K, Schramm T, Schwartz DC,
"A Single-Molecule Barcoding System using Nanoslits for DNA Analysis: Nanocoding".
Methods in Molecular Biology, 2009, , IF=1.17
invited contribution to a Book of Micro and Nano Technologies in Bioanalysis, Vol. 544 pp 29-42

Jo K, Heien ML, Thompson LB, Zhong M, Nuzzo RG, Sweedler JV,
Mass Spectrometric Imaging of Peptide Release from Neuronal Cells within Microfluidic Devices,
Lab on a Chip, 2007, 7, 1454 - 1460, 11/1, IF=6.799 Highlight, Sep 2007

Jo K, Dhingra DM, Odijk T, de Pablo JJ, Graham MD, Runnheim R, Forrest D, and Schwartz DC,
A Single-Molecule Barcoding System Using Nanoslits for DNA Analysis,
Proceedings of the National Academy of Science of the USA (PNAS), 2007, 104, 2673-2678, 2/20, IF=11.205
Featured in Nature Nanotech

Chen YL, Jo K, Graham MD, de Pablo JJ, Schwartz DC,
DNA Molecules in Microfluidic Oscillatory Flow,
Macromolecules, 2005, 38, 6680-6687, 6/23, IF=5.985

Jo K, Hong S, Choi MU, Chang SI, Choi JD, Koh EH,
Purification and Characterization of the Recombinant Arabidopsis Thaliana Acetolactate Synthase,
Bulletin of Korean Chemical Society, 1997, 18, 648-653, IF=0.950

PATENTS

Chemical and method for analyzing dna sequence by visualizing single-molecule dna and use thereof
US11306074B2, US20200031810A1, 2022-04-19

단일 DNA 탐침 분자 기반 RNA 바이러스 감지를 위한 소형 다중진단
10-2020-0002259, 2020-01-07, PCT/KR2021/000103(2021-01-06)

DNA 서열 분석용 형광 단백질 조성물 및 이를 이용한 DNA 서열 분석 방법
10-2018-0161115,2018-12-13, 10-2145006, 2020-08-10

FLOURESCENT PROTEIN COMPOSITION FOR DNA SEQUENCE ANALYSIS AND METHOD FOR DNA SEQUENCE ANALYSIS USING SAME
US Patent Application No. 16/427,438, 2019-05-31

DNA 분자 시각화를 이용한 DNA 서열 분석용 화합물 및 그 이용 방법
10-2018-0086255,2018-07-24, 10-2119461(2020-06-01)

Dna 및 염색사의 이미지 서열 맵핑 방법
10-2017-0022734,2017-02-21, 10-1882133 (2018.07.19)

핵산과 결합 가능한 펩타이드를 이용하여 핵산을 분리하는 방법
KR20180001712A (2018.01.05)

Composition Comprising DNA binding peptide for DNA staining
US9976940B2, 2018-05-22, US Patent Application No. 15/100145, 2017-5-4

고밀도의 작용기를 갖는 DNA-펩타이드 복합체, DNA-펩타이드-나노재료 복합체 및 이의 제조 방법, DNA-금속 나노와이어 및 이의 제조 방법
KR101847294B1, 2018-04-10, 10-2016-0142832,2016-10-31
US Patent Applications No. 16/346,187, 2019-04-30

Method for evaluating DNA damage from analyte
US Patent Application No. 15/392986, 2016-12-28

DNA 결합 펩타이드를 포함하는 DNA 염색용 조성물
10-1792786, 2017-10-26 (2015-03-27)

System and Method for Presenting Large DNA Molecule for Analysis
US Patent Application No. 61/877,570

단일 핵산 분자 분석용 고상 지지체
10-2011-0059528, 2011-06-20 10-1318411, 2013-10-08

Method of DNA analysis using micro/nanochannels
US Patent (US7960105), 2011-06-14
World Intellectual Property Organization(WO/2007/065025)